diff --git a/cmd/cmd.go b/cmd/cmd.go
index 090685a..286b59d 100644
--- a/cmd/cmd.go
+++ b/cmd/cmd.go
@@ -17,6 +17,7 @@ var (
 	host    string
 	port    int
 	token   string
+	tools   string
 	version bool
 )
 
@@ -31,6 +32,9 @@ func init() {
 	flag.StringVar(&token, "token", "", "")
 	flag.BoolVar(&flagPkg.ReadOnly, "r", false, "")
 	flag.BoolVar(&flagPkg.ReadOnly, "read-only", false, "")
+	defaultTools := os.Getenv("GITEA_TOOLS")
+	flag.StringVar(&tools, "O", defaultTools, "")
+	flag.StringVar(&tools, "tools", defaultTools, "")
 	flag.BoolVar(&flagPkg.Debug, "d", false, "")
 	flag.BoolVar(&flagPkg.Debug, "debug", false, "")
 	flag.BoolVar(&flagPkg.Insecure, "k", false, "")
@@ -48,6 +52,7 @@ func init() {
 		fmt.Fprintf(w, "  -p, -port <number>\tHTTP server port (default: 8080)\n")
 		fmt.Fprintf(w, "  -T, -token <token>\tPersonal access token\n")
 		fmt.Fprintf(w, "  -r, -read-only\tExpose only read-only tools\n")
+		fmt.Fprintf(w, "  -O, -tools <names>\tComma-separated list of tool names to expose\n")
 		fmt.Fprintf(w, "  -d, -debug\tEnable debug mode\n")
 		fmt.Fprintf(w, "  -k, -insecure\tIgnore TLS certificate errors\n")
 		fmt.Fprintf(w, "  -v, -version\tPrint version and exit\n")
@@ -59,6 +64,7 @@ func init() {
 		fmt.Fprintf(w, "  GITEA_HOST\tOverride Gitea host URL\n")
 		fmt.Fprintf(w, "  GITEA_INSECURE\tSet to 'true' to ignore TLS errors\n")
 		fmt.Fprintf(w, "  GITEA_READONLY\tSet to 'true' for read-only mode\n")
+		fmt.Fprintf(w, "  GITEA_TOOLS\tComma-separated list of tool names to expose\n")
 		fmt.Fprintf(w, "  MCP_MODE\tOverride transport mode\n")
 		w.Flush()
 	}
@@ -95,6 +101,16 @@ func init() {
 		flagPkg.ReadOnly = true
 	}
 
+	allowed := map[string]struct{}{}
+	for t := range strings.SplitSeq(tools, ",") {
+		if t = strings.TrimSpace(t); t != "" {
+			allowed[t] = struct{}{}
+		}
+	}
+	if len(allowed) > 0 {
+		flagPkg.AllowedTools = allowed
+	}
+
 	if os.Getenv("GITEA_DEBUG") == "true" {
 		flagPkg.Debug = true
 	}
diff --git a/operation/operation.go b/operation/operation.go
index 597e692..e5a9df6 100644
--- a/operation/operation.go
+++ b/operation/operation.go
@@ -27,53 +27,27 @@ import (
 	mcpContext "gitea.com/gitea/gitea-mcp/pkg/context"
 	"gitea.com/gitea/gitea-mcp/pkg/flag"
 	"gitea.com/gitea/gitea-mcp/pkg/log"
+	"gitea.com/gitea/gitea-mcp/pkg/tool"
 
 	"github.com/mark3labs/mcp-go/server"
 )
 
-var mcpServer *server.MCPServer
+var (
+	mcpServer *server.MCPServer
+
+	domainTools = []*tool.Tool{
+		user.Tool, actions.Tool, repo.Tool, notification.Tool, issue.Tool,
+		label.Tool, milestone.Tool, packages.Tool, pull.Tool, search.Tool,
+		version.Tool, wiki.Tool, timetracking.Tool,
+	}
+)
 
 func RegisterTool(s *server.MCPServer) {
-	// User Tool
-	s.AddTools(user.Tool.Tools()...)
-
-	// Actions Tool
-	s.AddTools(actions.Tool.Tools()...)
-
-	// Repo Tool
-	s.AddTools(repo.Tool.Tools()...)
-
-	// Notification Tool
-	s.AddTools(notification.Tool.Tools()...)
-
-	// Issue Tool
-	s.AddTools(issue.Tool.Tools()...)
-
-	// Label Tool
-	s.AddTools(label.Tool.Tools()...)
-
-	// Milestone Tool
-	s.AddTools(milestone.Tool.Tools()...)
-
-	// Package Tool
-	s.AddTools(packages.Tool.Tools()...)
-
-	// Pull Tool
-	s.AddTools(pull.Tool.Tools()...)
-
-	// Search Tool
-	s.AddTools(search.Tool.Tools()...)
-
-	// Version Tool
-	s.AddTools(version.Tool.Tools()...)
-
-	// Wiki Tool
-	s.AddTools(wiki.Tool.Tools()...)
-
-	// Time Tracking Tool
-	s.AddTools(timetracking.Tool.Tools()...)
-
+	for _, t := range domainTools {
+		s.AddTools(t.Tools()...)
+	}
 	s.DeleteTools("")
+	tool.WarnUnmatchedAllowedTools(domainTools...)
 }
 
 // parseAuthToken extracts the token from an Authorization header.
diff --git a/pkg/flag/flag.go b/pkg/flag/flag.go
index 9ebffa1..9e537c4 100644
--- a/pkg/flag/flag.go
+++ b/pkg/flag/flag.go
@@ -7,7 +7,8 @@ var (
 	Version string
 	Mode    string
 
-	Insecure bool
-	ReadOnly bool
-	Debug    bool
+	Insecure     bool
+	ReadOnly     bool
+	Debug        bool
+	AllowedTools map[string]struct{}
 )
diff --git a/pkg/tool/tool.go b/pkg/tool/tool.go
index b137451..84cc474 100644
--- a/pkg/tool/tool.go
+++ b/pkg/tool/tool.go
@@ -1,7 +1,11 @@
 package tool
 
 import (
+	"slices"
+	"strings"
+
 	"gitea.com/gitea/gitea-mcp/pkg/flag"
+	"gitea.com/gitea/gitea-mcp/pkg/log"
 
 	"github.com/mark3labs/mcp-go/server"
 )
@@ -27,12 +31,48 @@ func (t *Tool) RegisterRead(s server.ServerTool) {
 }
 
 func (t *Tool) Tools() []server.ServerTool {
-	tools := make([]server.ServerTool, 0, len(t.write)+len(t.read))
-	if flag.ReadOnly {
-		tools = append(tools, t.read...)
-		return tools
+	all := make([]server.ServerTool, 0, len(t.write)+len(t.read))
+	if !flag.ReadOnly {
+		all = append(all, t.write...)
 	}
-	tools = append(tools, t.write...)
-	tools = append(tools, t.read...)
-	return tools
+	all = append(all, t.read...)
+	if len(flag.AllowedTools) == 0 {
+		return all
+	}
+	filtered := make([]server.ServerTool, 0, len(all))
+	for _, st := range all {
+		if _, ok := flag.AllowedTools[st.Tool.Name]; ok {
+			filtered = append(filtered, st)
+		}
+	}
+	return filtered
+}
+
+// WarnUnmatchedAllowedTools logs any names in flag.AllowedTools that don't
+// match a tool registered on any of the given domains. No-op if the allowlist
+// is empty.
+func WarnUnmatchedAllowedTools(domains ...*Tool) {
+	if len(flag.AllowedTools) == 0 {
+		return
+	}
+	known := map[string]struct{}{}
+	for _, d := range domains {
+		for _, st := range d.read {
+			known[st.Tool.Name] = struct{}{}
+		}
+		for _, st := range d.write {
+			known[st.Tool.Name] = struct{}{}
+		}
+	}
+	var unmatched []string
+	for name := range flag.AllowedTools {
+		if _, ok := known[name]; !ok {
+			unmatched = append(unmatched, name)
+		}
+	}
+	if len(unmatched) == 0 {
+		return
+	}
+	slices.Sort(unmatched)
+	log.Warnf("Unknown tools in --tools allowlist (ignored): %s", strings.Join(unmatched, ", "))
 }
diff --git a/pkg/tool/tool_test.go b/pkg/tool/tool_test.go
new file mode 100644
index 0000000..7b62857
--- /dev/null
+++ b/pkg/tool/tool_test.go
@@ -0,0 +1,100 @@
+package tool
+
+import (
+	"slices"
+	"testing"
+
+	"gitea.com/gitea/gitea-mcp/pkg/flag"
+
+	"github.com/mark3labs/mcp-go/mcp"
+	"github.com/mark3labs/mcp-go/server"
+)
+
+func makeTool(name string) server.ServerTool {
+	return server.ServerTool{Tool: mcp.NewTool(name)}
+}
+
+func names(sts []server.ServerTool) []string {
+	out := make([]string, len(sts))
+	for i, st := range sts {
+		out[i] = st.Tool.Name
+	}
+	return out
+}
+
+func TestTools(t *testing.T) {
+	tests := []struct {
+		name     string
+		readOnly bool
+		allowed  map[string]struct{}
+		read     []string
+		write    []string
+		want     []string
+	}{
+		{
+			name:  "no filters returns write then read",
+			read:  []string{"r1", "r2"},
+			write: []string{"w1", "w2"},
+			want:  []string{"w1", "w2", "r1", "r2"},
+		},
+		{
+			name:     "read-only excludes write",
+			readOnly: true,
+			read:     []string{"r1", "r2"},
+			write:    []string{"w1"},
+			want:     []string{"r1", "r2"},
+		},
+		{
+			name:    "allowlist keeps only listed",
+			allowed: map[string]struct{}{"r1": {}, "w1": {}},
+			read:    []string{"r1", "r2"},
+			write:   []string{"w1", "w2"},
+			want:    []string{"w1", "r1"},
+		},
+		{
+			name:     "allowlist intersected with read-only drops write entries",
+			readOnly: true,
+			allowed:  map[string]struct{}{"r1": {}, "w1": {}},
+			read:     []string{"r1", "r2"},
+			write:    []string{"w1", "w2"},
+			want:     []string{"r1"},
+		},
+		{
+			name:    "allowlist with only unknown names returns empty",
+			allowed: map[string]struct{}{"unknown": {}},
+			read:    []string{"r1"},
+			write:   []string{"w1"},
+			want:    []string{},
+		},
+		{
+			name:    "empty allowlist map passes through",
+			allowed: map[string]struct{}{},
+			read:    []string{"r1"},
+			write:   []string{"w1"},
+			want:    []string{"w1", "r1"},
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			origRO, origAllow := flag.ReadOnly, flag.AllowedTools
+			t.Cleanup(func() {
+				flag.ReadOnly, flag.AllowedTools = origRO, origAllow
+			})
+			flag.ReadOnly = tt.readOnly
+			flag.AllowedTools = tt.allowed
+
+			tr := New()
+			for _, n := range tt.read {
+				tr.RegisterRead(makeTool(n))
+			}
+			for _, n := range tt.write {
+				tr.RegisterWrite(makeTool(n))
+			}
+
+			got := names(tr.Tools())
+			if !slices.Equal(got, tt.want) {
+				t.Errorf("Tools() = %v, want %v", got, tt.want)
+			}
+		})
+	}
+}